Attached savefile and mods to recreate, by pressing the button indicated by "Single/First Advance"

The chest issue seems to happen less frequently, and the number of hung bots varies on each run, but there are almost always some that get hung.
I also found that If I place a few extra roboports to the left, such that the lognet is not split by the removal of the old wall, no bots hang.
Edit: realized i forgot version number