EDIT: Sorry for the Delay but I didn't think anyone would reply to this so fast.
![Smile :)](./images/smilies/icon_e_smile.gif)
In the attachment you can find the save file, where at the moment a small rail section north to the main factory was being destroyed. I hope this doesn't waste your time, as it seems quite unusual and is not one of the bugs concerning the whole community, so the issue might actually be based entirely on my own missunderstanding of the target selection.