You should allow the steam-generator to fill with steam then connect the pipes. I've never had such a message pop up.
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local superHeatedSteamConsumed = (energyBufferCapacity - energy) / ((generatorFluidBox.temperature - fluid_properties[generatorFluidBox.type][1]) * fluid_properties[generatorFluidBox.type][3] * generatorEfficiency * 1000)
A temporary fix is to replace that line with
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local superHeatedSteamConsumed = math.max(0,(energyBufferCapacity - energy) / ((generatorFluidBox.temperature - fluid_properties[generatorFluidBox.type][1]) * fluid_properties[generatorFluidBox.type][3] * generatorEfficiency * 1000))