So I checked the previous versions to make sure, and it is only with the latest (0.17.53) that I encountered this issue: my screen starts flickering whenever Compilatron's message box appears, and it doesn't seem to matter how far I am from it. I noticed this on our servers first, double checked on RedMew's servers and finally in the base game's Introduction > Arrival scenario (see the video).
Oh, and I updated my graphics card drivers, so I don't think it's coming from there since the display works perfectly fine in the previous versions of Factorio. And in case it helps you narrow down the problem, I use a Linux OS, Ubuntu 16.04.
You have your bug report now, Bilka.
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Arty714
EDIT: Added the Log.
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