Can confirm bug, rather annoying on ghost items.

I have mods in my game that aren't in that save.

Here's the list for that save:

Afraid of the Dark (v 1.0.20)
Angel's Addons - Petrochem Train (v 0.3.2)
Angel's Addons - Smelting Train (v 0.1.1)
Angel's Addons - Warehouses (v 0.3.0)
Auto Deconstruct (v 0.1.11)
Bob's Adjustable Inserters (v 0.16.8 ...

Version 0.1.0 has an issue with the spawning of the oil refinery.

I went exploring in my heavily modded save to find this.

https://imgur.com/HaQytde

Tested in Factorio v0.16.51 (Steam)