That screenshot was with a sandbox, cheats on, daylight on, items on. If that makes a difference. It also happens in normal gameplay with a player character.
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0.000 2019-03-30 00:32:18; Factorio 0.17.22 (build 44153, linux64, alpha)
0.027 Operating system: Linux (ManjaroLinux 18.0.4)
0.027 Program arguments: "/run/media/ohmyfactorio/Games/factorio/bin/x64/factorio"
0.027 Read data path: /run/media/ohmyfactorio/Games/factorio/data
0.027 Write data path: /run/media/ohmyfactorio/Games/factorio [1643/249999MB]
0.027 Binaries path: /run/media/ohmyfactorio/Games/factorio/bin
0.032 System info: [CPU: Intel(R) Core(TM) i3-4170 CPU @ 3.70GHz, 4 cores, RAM: 7848 MB]
0.032 Environment: DISPLAY=:0 WAYLAND_DISPLAY=<unset> DESKTOP_SESSION=/usr/share/xsessions/plasma XDG_SESSION_DESKTOP=KDE XDG_CURRENT_DESKTOP=KDE
0.033 Display options: [FullScreen: 1] [VSync: 1] [UIScale: automatic (100.0%)] [Native DPI: 1] [Screen: 255] [Special: 00] [Lang: en]
0.096 Available displays: 1
0.096 [0]: S22C170 22" - {[0,0], 1920x1080, SDL_PIXELFORMAT_RGB888, 60Hz}
0.123 Initialised OpenGL:[0] Mesa DRI Intel(R) Haswell ; driver: 4.5 (Core Profile) Mesa 18.3.4
0.123 [Extensions] s3tc:yes; KHR_debug:yes; ARB_clear_texture:yes, ARB_copy_image:yes
0.123 [Version] 4.5
0.222 Graphics settings preset: high
0.222 Dedicated video memory size 1536 MB (detected from Intel(R) Haswell; VendorID: 0x8086; DeviceID: 0x 41e)
0.222 Graphics options: [Graphics quality: high] [Video memory usage: high] [Light scale: 25%] [DXT: high-quality]
0.222 [Max load threads: 32] [Max texture size: 0] [Tex.Stream.: 1] [Rotation quality: low] [Color: 32bit]
0.307 Loading mod core 0.0.0 (data.lua)
0.369 Loading mod base 0.17.22 (data.lua)
0.536 Loading mod base 0.17.22 (data-updates.lua)
0.620 Checksum for core: 1532611835
0.620 Checksum of base: 1465907793
1.042 Loading sounds...
1.105 Info PlayerData.cpp:67: Local player-data.json available, timestamp 1553876585
1.105 Info PlayerData.cpp:74: Cloud player-data.json unavailable
1.188 Initial atlas bitmap size is 16384
1.308 Created atlas bitmap 16384x16384 [none]
1.338 Created atlas bitmap 16384x4496 [none]
1.348 Created atlas bitmap 16384x2116 [decal]
1.374 Created atlas bitmap 16384x3808 [low-object]
1.386 Created atlas bitmap 16384x1888 [mipmap, linear-minification, linear-magnification, linear-mip-level]
1.415 Created atlas bitmap 16384x6880 [terrain, mipmap, linear-minification, linear-mip-level, no-crop]
1.418 Created atlas bitmap 16384x480 [smoke, mipmap, linear-minification, linear-magnification]
1.426 Created atlas bitmap 16384x456 [not-compressed, mipmap, linear-minification, linear-magnification, linear-mip-level, no-crop, no-scale]
1.428 Created atlas bitmap 16384x748 [alpha-mask]
1.453 Created atlas bitmap 16384x11244 [shadow, linear-magnification, alpha-mask]
1.456 Created atlas bitmap 16384x1264 [shadow, mipmap, linear-magnification, alpha-mask]
1.558 Created virtual atlas pages 4096x4096x5
1.633 Texture processor created. GPU accelerated compression Supported: yes, Enabled: yes/yes. Test FAILED. YCoCgDXT PSNR: 35.83, BC3 PSNR: 25.10
2.402 Parallel Sprite Loader initialized (threads: 3)
26.026 Sprites loaded
27.285 Generated mipmaps for atlas of size 16384x3808
27.908 Generated mipmaps for atlas of size 16384x1888
28.736 Generated mipmaps for atlas of size 16384x6880
28.951 Generated mipmaps for atlas of size 16384x480
29.075 Generated mipmaps for atlas of size 16384x456
29.265 Generated mipmaps for atlas of size 16384x1264
29.330 Generated mipmaps for virtual atlas of size 8192x12288
29.381 Custom inputs active: 6
29.437 Factorio initialised
29.438 Info HttpSharedState.cpp:54: Downloading https://updater.factorio.com/updater/get-available-versions?username=ohmyfactorio&token=<private>&apiVersion=2
31.984 0 packages available to download (experimental updates enabled).
54.409 Loading level.dat: 1072554 bytes.
54.411 Info Scenario.cpp:161: Map version 0.17.22-1
54.438 Checksum for script /run/media/ohmyfactorio/Games/factorio/temp/currently-playing/control.lua: 4196669447
82.967 Loading level.dat: 1072554 bytes.
82.967 Info Scenario.cpp:161: Map version 0.17.22-1
82.991 Checksum for script /run/media/ohmyfactorio/Games/factorio/temp/currently-playing/control.lua: 4196669447
106.661 Quitting: user-quit.
106.662 Info GlobalContext.cpp:684: Waiting for child processes to exit:
107.318 Goodbye