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I had a blueprint that I'd saved a while back - but not saved to my library, only to my inventory. I was placing multiples of this design on the ground and got one copy misaligned, so I hit CTRL+Z to undo. However, this removed the blueprint from my hand, and didn't put it back in my inventory.
Luckily since I'd already stamped it down a few times it wasn't too hard to recover, but it was definitely inconvenient nonetheless.
Steps to recreate:
1. Create a blueprint of any kind, saving it to the player inventory.
2. Select the saved blueprint.
3. Stamp the blueprint somewhere.
4. press CTRL+Z to 'undo' the stamp. Blueprint vanishes.