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This is the 2nd time it happened, I think we fixed it by unresearching and then researching the tech again by console commands (That was with the red inserter)
Assembling machine 1s can only produce recipes that contain a maximum of 2 items. All of the recipes that "aren't showing" in the GUI have > 2 ingredients.
You need to upgrade your assembling machines to level 2s or 3s.
If you want to get ahold of me I'm almost always on Discord.